YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GBRG3_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAKLLLLLC LFSGLHARSR RVEEDDSEDS PSNQKWVLAP KSQDTDVTLI LNKLLREYDK  60
   61 KLRPDIGIKP TVIDVDIYVN SIGPVSSINM EYQIDIFFAQ TWTDSRLRFN STMKILTLNS 120
  121 NMVGLIWIPD TIFRNSKTAE AHWITTPNQL LRIWNDGKIL YTLRLTINAE CQLQLHNFPM 180
  181 DAHACPLTFS SYGYPKEEMI YRWRKNSVEA ADQKSWRLYQ FDFMGLRNTT EIVTTSAGDY 240
  241 VVMTIYFELS RRMGYFTIQT YIPCILTVVL SWVSFWIKKD ATPARTTLGI TTVLTMTTLS 300
  301 TIARKSLPRV SYVTAMDLFV TVCFLFVFAA LMEYATLNYY SSCRKPTIRK KKTSLLHPDS 360
  361 TRWIPDRISL QAPSNYSLLD MRPPPPVMIT LNNSMYWQEF EDTCVYECLD GKDCQSFFCC 420
  421 YEECKSGSWR RGRIHIDVSE LDSYSRVFFP TSFLLFNLVY WVGYLYL

Type	Start	End	Confidence
Signal Peptide	1	17	0.99
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	254	0.98
Transmembrane Helix	255	276	0.92
Cytoplasmic	277	285	0.78
Transmembrane Helix	286	303	0.88
Non-Cytoplasmic	304	314	0.68
Transmembrane Helix	315	340	0.80
Cytoplasmic	341	443	0.88
Transmembrane Helix	444	464	0.74
Non-Cytoplasmic	465	467	0.66