YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19716320
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.69
Transmembrane Helix	12	33	0.82
Non-Cytoplasmic	34	104	0.75
Transmembrane Helix	105	124	0.74
Cytoplasmic	125	131	0.55
Transmembrane Helix	132	154	0.81
Non-Cytoplasmic	155	163	0.69
Transmembrane Helix	164	183	0.92
Cytoplasmic	184	191	0.78
Transmembrane Helix	192	215	0.90
Non-Cytoplasmic	216	227	0.76
Transmembrane Helix	228	250	0.87
Cytoplasmic	251	257	0.82
Transmembrane Helix	258	281	0.81
Non-Cytoplasmic	282	296	0.85
Transmembrane Helix	297	320	0.91
Cytoplasmic	321	336	0.66
Transmembrane Helix	337	362	0.77
Non-Cytoplasmic	363	376	0.53
Transmembrane Helix	377	394	0.56
Cytoplasmic	395	438	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLRWSGIWG LYPPRIFPSL LVVVALVGLL PVLRSHGLQL NPTASTIRGS EPPRERSIGD  60
   61 VTTAPSEPVH HPDDRNLTNL YIEHGAKPVR KAFPVLDIDY LHVRTPFEIS LWILLACLMK 120
  121 IGFHVIPTIS SIVPESCLLI VVGLLVGGLI KGVGETPPFL QSDVFFLFLL PPIILDAGYF 180
  181 LPLRQFTENL GTILIFAVVG TLWNAFFLGG LLYAVCLVGG EQINNIGLLD TLLFGSIISA 240
  241 VDPVAVLAVF EEIHINELLH ILVFGESLLN DAVTVVLYHL FEEFASYEYV GISDIFLGFL 300
  301 SFFVVSLGGV FVGVVYGVIA AFTSRFTSHI RVIEPLFVFL YSYMAYLSAE LFHLSGIMAL 360
  361 IASGVVMRPY VEANISRPLH AVPVLAGIVP QMIVQKNRID LNRRAFTPFF KQLHKTVPDQ 420
  421 LDTPNRATSN FHFLFISI