YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157822703, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMNSTCVEE QHDLDHYLFP VVYIFVFIVS VPANIGSLCV SFLQAKKENE LGVYLFSLSL  60
   61 SDLLYALTLP LWINYTWNKD NWTLSPTLCK GSVFFTYLNF YSSTAFLTCI ALDRYLAVVY 120
  121 PLRFSFLRTR RFAFITSLSI WILESVFNSI LLWEDETSVE YCDAEKSNFT LCYDKYPLEK 180
  181 WQINLNLFRT FLGYAIPLVT IMICNHKVYR AVKHNQATEN NERRRIIKLL ASITLTFILC 240
  241 FTPFHVMVLI RCILERNVNF NNKTGKQTFT VYRITVALTS LNCVADPILY CFVTETGRSD 300
  301 MWNILKVCAR KRNRSRGQKR DILSVSTRDT IELEIIE

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.94
Transmembrane Helix	21	43	0.92
Cytoplasmic	44	50	0.93
Transmembrane Helix	51	73	0.91
Non-Cytoplasmic	74	93	0.91
Transmembrane Helix	94	116	0.82
Cytoplasmic	117	131	0.80
Transmembrane Helix	132	151	0.92
Non-Cytoplasmic	152	189	0.93
Transmembrane Helix	190	209	0.92
Cytoplasmic	210	228	0.90
Transmembrane Helix	229	249	0.94
Non-Cytoplasmic	250	337	0.83