YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ELOV5_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHFDASLST YFRALLGPRD TRVKGWFLLD NYIPTFVCSA IYLLIVWLGP KYMKNRQPFS  60
   61 CRGILVVYNL GLTLLSLYMF YELVTGVWEG KYNFFCQGTR SAGESDMKVI RVLWWYYFSK 120
  121 LIEFMDTFFF ILRKNNHQIT VLHVYHHATM LNIWWFVMNW VPCGHSYFGA TLNSFIHVLM 180
  181 YSYYGLSSVP SMRPYLWWKK YITQGQLVQF VLTIIQTSCG VIWPCSFPLG WLYFQIGYMI 240
  241 SLIALFTNFY IQTYNKKGAS RRKEHLKGHQ NGSMTAVNGH TNNFASLENS VTSRKQRKD

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.84
Transmembrane Helix	32	49	0.92
Cytoplasmic	50	60	0.76
Transmembrane Helix	61	81	0.88
Non-Cytoplasmic	82	112	0.86
Transmembrane Helix	113	132	0.69
Cytoplasmic	133	140	0.66
Transmembrane Helix	141	158	0.70
Non-Cytoplasmic	159	164	0.65
Transmembrane Helix	165	186	0.81
Cytoplasmic	187	205	0.75
Transmembrane Helix	206	225	0.92
Non-Cytoplasmic	226	231	0.74
Transmembrane Helix	232	253	0.90
Cytoplasmic	254	299	0.98