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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CDHR5_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.95
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAPALLWPP LLLPLLTVLF GHLPGTLAQA QVCSANQTVF TMNENTTVSG PLADIFVPED  60
   61 QYVTLGQLST PNAFKVEGNK LFLIVTPDYE ENSLLEAVLE CKRGDTLVTQ FRVFVAVLDI 120
  121 NDNAPEFPFT IKEYNVSEDT RVNTIVIPET ELKATDADKD DILVYTLQEV TPNASKFFSL 180
  181 VGINSPALKL DQTLDYYKSP NMTFRLLARD TREENVIPSH TATATVVLNV LPADLRTPWF 240
  241 LPCSFTDDYF CIQAQYHTVI PTGHKLPSPL ILSPGPIYAV DGDQAINQPI VYSIMMGNTD 300
  301 DTFIINKDDG NLTMAKSIPS PMTFTLVVRA EQADMARYSV TQAVVEARDV TGNPLQFSQS 360
  361 LYFGTVVLGS EAGTAVKDKT FPSEILRIQA QYLGFPDLNS AVTYQVTNSS EFIMNKDILL 420
  421 TTVPMETERT IRIEVEANNT VTKDIATTIV EIQVSEREPP STESPTPPEA GGTTGPSSNT 480
  481 TLETPSTSGT SQGPATTSSG GSAGPFPPAG TTLSPLTSAP TVPGGSPTLG ISTSPQTATP 540
  541 GGDATQTPKP GTSQPMVPTP GASTSSQPAT PSGSSTQTPK PGTSQPMVPT PGASTSSQPA 600
  601 TPSGSSTQTP RPGTSQPMVP TPGASTSSQP ATPSGSTQTP KPGTSQPTTT GPISGVGELG 660
  661 DGQRFSTVDM AVLGGVLGAL LLLALIFLII LIHKHYRHRF TCCSGKAKEP QPSGYDNLTF 720
  721 LPDNKAKWSP TSNRKPEPGP EPVQPPLRPP SPMSSSPTPP SSMPPSPQPK ASGSPKTVQA 780
  781 GDSPSAVRSI LTKERRPEGE GGYKAVWFGK DIGAEADVVV LNEPTADVDS ASASGSEGSD 840
  841 DDDDPDQKKS LRLGAVADNT YV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle