YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FZD2_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	28	0.99
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	251	0.99
Transmembrane Helix	252	273	0.94
Cytoplasmic	274	284	0.86
Transmembrane Helix	285	305	0.92
Non-Cytoplasmic	306	340	0.92
Transmembrane Helix	341	361	0.84
Cytoplasmic	362	375	0.76
Transmembrane Helix	376	398	0.86
Non-Cytoplasmic	399	423	0.88
Transmembrane Helix	424	444	0.94
Cytoplasmic	445	463	0.91
Transmembrane Helix	464	486	0.91
Non-Cytoplasmic	487	525	0.95
Transmembrane Helix	526	546	0.93
Cytoplasmic	547	570	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRARSALPRS ALPRLLLPLL LLPAAGPAQF HGEKGISIPD HGFCQPISIP LCTDIAYNQT  60
   61 IMPNLLGHTN QEDAGLEVHQ FYPLVKVQCS PELRFFLCSM YAPVCTVLEQ AIPPCRSICE 120
  121 RARQGCEALM NKFGFQWPER LRCEHFPRHG AEQICVGQNH SEDGTPALLT TAPPSGLQPG 180
  181 AGGTPGGPGG GGAPPRYATL EHPFHCPRVL KVPSYLSYKF LGERDCAAPC EPARPDGSMF 240
  241 FSHHHTRFAR LWILTWSVLC CASTFFTVTT SLVAMQRFRY PERPIIFLSG CYTMVSVAYI 300
  301 AGFVLQERVV CNERFSEDGY RTVGQGTKKE GCTILFMMLY FFSMASSIWW VILSLTWFLA 360
  361 AGMKWGHAAI EANSQYFHLA AWAVPAVKTI TILAMGQIDG DLLSGVCFVG LNRLDPLRGF 420
  421 VLAPLFVYLF IGTSFLLAGF VSLFRIRTIM KHDGTKTEPL ERLMVRIGVF SVLYTVPATI 480
  481 VIACYFYEQA FREHWERSWV SQHCKSLAIP CPAHYTPRTS PDFTVYMIKY LMTLIVGITS 540
  541 GFWIWSGKTL HSWRKFYTRL TNSRHGETTV