YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CD8B_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.88
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPWLWLVFS VKLSALWGSS ALLQTPSSLL VQTNQTAKMS CEAKTFPKGT TIYWLRELQD  60
   61 SNKNKHFEFL ASRTSTKGIK YGERVKKNMT LSFNSTLPFL KIMDVKPEDS GFYFCAMVGS 120
  121 PMVVFGTGTK LTVVDVLPTT APTKKTTLKK KQCPTPHPKT QKGLTCGLIT LSLLVACILV 180
  181 LLVSLSVAIH FHCMRRRARI HFMKQFHK

Type	Start	End	Confidence
Signal Peptide	1	30	0.80
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	167	0.91
Transmembrane Helix	168	193	0.88
Cytoplasmic	194	208	0.98