YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CXCR3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLEVSERQV LDASDIAFLL ENSTSPYDYG ENESDFSDSP PCPQDFSLNF DRTFLPVLYS  60
   61 LLFLLGLLGN GAVAAVLLSQ RTALSSTDTF LLHLAVADVL LVLTLPLWAV DAAAQWVFGS 120
  121 GLCKVAGALF NINFYAGAFL LACISFDRYL SIVHATQIYR RDPWVRVALT CIVVWGLCVL 180
  181 FALPDFIFLS ASHDQRLNAT HCQYNFPQVG RTALRVLQLV AGFLMPLLVM AYCYAHILAV 240
  241 LLVSRGQRRF RAMRLVVVVV VAFAVCWTPY HLVVLVDILM DVGVLARNCG RESHVDVAKS 300
  301 VTSGMGYMHC CLNPLLYAFV GVKFKEQMWM LLMRLGRSDQ RGPQRQPSSS RRESSWSETT 360
  361 EASYLGL

Type	Start	End	Confidence
Non-Cytoplasmic	1	56	0.96
Transmembrane Helix	57	78	0.94
Cytoplasmic	79	89	0.86
Transmembrane Helix	90	110	0.94
Non-Cytoplasmic	111	125	0.83
Transmembrane Helix	126	146	0.85
Cytoplasmic	147	163	0.83
Transmembrane Helix	164	184	0.92
Non-Cytoplasmic	185	218	0.88
Transmembrane Helix	219	243	0.83
Cytoplasmic	244	251	0.91
Transmembrane Helix	252	273	0.91
Non-Cytoplasmic	274	304	0.93
Transmembrane Helix	305	324	0.89
Cytoplasmic	325	367	0.94