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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: HEPH_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.96
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAGHLLWAL LLMHSLCSLP TDGAIRNYYL GIQDIQWNYA PKGRNVITNQ TLNNDTVASS  60
   61 FLKSGKNRIG GTYKKTVYKE YSDGTYTNEI AKPAWLGFLG PLLKAEMGDV ILIHLKNFAS 120
  121 RPYTIHPHGV FYEKDSEGSL YPDGSSGYLK ADDSVPPGGS HVYNWSIPEG HAPTEADPAC 180
  181 LTWIYHSHVD APRDIATGLI GPLITCKRGT LDGNSPPQRK DVDHNFFLLF SVIDENLSWH 240
  241 LDDNIATYCS DPASVDKEDG PFQDSNRMHA INGFVFGNLP ELSMCAQKHV AWHLFGMGNE 300
  301 IDVHTAFFHG QTLSIRGHRT DVAHIFPATF VTAEMVPQKS GTWLISCVVN SHLKSGMQAF 360
  361 YKVDSCSMDP PVEQLTGKVR QYFIQAHEIQ WDYGPIGHDG RTGKSLREPG SGPDKYFQKS 420
  421 SSRIGGTYWK VRYEAFQDET FQERLHQEEE THLGILGPVI RAEVGDTIQV VFYNRASQPF 480
  481 SIQPHGVFYE KSSEGTVYND GTSYPKVAKS FEKVTYYWTV PPHAGPTAED PACLTWMYFS 540
  541 AADPTRDTNS GLVGPLLVCK AGALGEDGKQ KGVDKEFFLL FTIFDENESW YNNANQAAGM 600
  601 LDSRLLSEDV EGFEDSNRMH AINGFLFSNL PRLDICKGDT VAWHLLGLGT ENDVHGVMFE 660
  661 GNTLQLQGMR KSAAMLFPHT FVTAIMQPDN PGIFEIYCQA GSHREAGMQA IYNVSQCSSH 720
  721 QDSPRQHYQA SRVYYIMAEE IEWDYCPDRS WELEWYNTSE KDSYGHVFLS NKDGLLGSKY 780
  781 KKAVFREYTD GTFRIPQPRS GPEEHLGILG PLIRGEVGDI LTVVFKNKAS RPYSIHAHGV 840
  841 LESSTGWPQA AEPGEVLTYQ WNIPERSGPG PSDSACVSWI YYSAVDPIKD MYSGLVGPLV 900
  901 ICRNGILEPN GGRNDMDREF ALLFLIFDEN QSWYLKENIA TYGPQETSHV NLQDATFLES 960
  961 NKMHAINGKL YANLRGLTVY QGERVAWYML AMGQDTDIHT VHFHAESFLY QNGHSYRADV1020
 1021 VDLFPGTFEV VEMVASNPGA WLMHCHVTDH VHAGMETIFT VLSHEEHFST MTTITKEIGK1080
 1081 AVILQNIGEG NVKMLGMNIP VKNVEILSSA LIAICVVLLL IALALGGVVW YQHRQRKLRR1140
 1141 NRRSILDDSF KLLSLKQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle