YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATP6_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNENLFASFI TPTMMGLPIV VTIIMFPSIL FPSSERLISN RLHSFQHWLI KLIIKQMMLI  60
   61 HTPKGRTWAL MIVSLIMFIG STNLLGLLPH TFTPTTQLSM DLSMAIPLWA GAVILGFRHK 120
  121 LKNSLAHFSP QGTPISLIPM LIIIETISLF IQPMALAVRL TANITAGHLL MHLIGGATLV 180
  181 LMDISPPTAT ITFIILLLLT VLEFAVALIQ AYVFTLLVSL YLHDNT

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.85
Transmembrane Helix	9	31	0.88
Cytoplasmic	32	66	0.90
Transmembrane Helix	67	88	0.93
Non-Cytoplasmic	89	97	0.79
Transmembrane Helix	98	117	0.90
Cytoplasmic	118	134	0.76
Transmembrane Helix	135	156	0.85
Non-Cytoplasmic	157	163	0.72
Transmembrane Helix	164	182	0.92
Cytoplasmic	183	190	0.72
Transmembrane Helix	191	214	0.89
Non-Cytoplasmic	215	226	0.83