YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLD11_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVATCLQVVG FVTSFVGWIG IIVTTSTNDW VVTCSYTIPT CRKMDELGSK GLWADCVMAT  60
   61 GLHHCKPLVD ILILPGYAQA CRALMIAASV LGLPGILLLL TVLPCIRMGH EPGVAKYRRA 120
  121 QLAGVLLILL ALCAIVATIW FPVCAHREIT IVSFGYSLYA GWIGAVMCLV GGCVIVCCSG 180
  181 DAQSFGENRF YYSSGSSSPT HAKSAHV

Type	Start	End	Confidence
Cytoplasmic	1	7	0.72
Transmembrane Helix	8	27	0.85
Non-Cytoplasmic	28	82	0.88
Transmembrane Helix	83	103	0.94
Cytoplasmic	104	121	0.84
Transmembrane Helix	122	143	0.92
Non-Cytoplasmic	144	157	0.88
Transmembrane Helix	158	180	0.91
Cytoplasmic	181	207	0.96