YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VGLU3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	77	0.97
Transmembrane Helix	78	101	0.80
Non-Cytoplasmic	102	128	0.90
Transmembrane Helix	129	150	0.81
Cytoplasmic	151	158	0.67
Transmembrane Helix	159	178	0.80
Non-Cytoplasmic	179	187	0.49
Transmembrane Helix	188	207	0.69
Cytoplasmic	208	218	0.86
Transmembrane Helix	219	240	0.87
Non-Cytoplasmic	241	247	0.60
Transmembrane Helix	248	267	0.90
Cytoplasmic	268	309	0.96
Transmembrane Helix	310	332	0.86
Non-Cytoplasmic	333	351	0.79
Transmembrane Helix	352	374	0.84
Cytoplasmic	375	390	0.84
Transmembrane Helix	391	409	0.80
Non-Cytoplasmic	410	414	0.64
Transmembrane Helix	415	437	0.87
Cytoplasmic	438	447	0.66
Transmembrane Helix	448	471	0.88
Non-Cytoplasmic	472	482	0.67
Transmembrane Helix	483	502	0.89
Cytoplasmic	503	588	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFNAFDTFK EKILKPGKEG VKNAVGDSLG ILQRKLDGTN EEGDAIELSE EGRPVQTSRA  60
   61 RAPVCDCSCC GIPKRYIIAV MSGLGFCISF GIRCNLGVAI VEMVNNSTVY VDGKPEIQTA 120
  121 QFNWDPETVG LIHGSFFWGY IVTQIPGGFI SNKFAANRVF GAAIFLTSTL NMFIPSAARV 180
  181 HYGCVMCVRI LQGLVEGVTY PACHGMWSKW APPLERSRLA TTSFCGSYAG AVVAMPLAGV 240
  241 LVQYIGWASV FYIYGMFGII WYMFWLLQAY ECPAVHPTIS NEERTYIETS IGEGANLASL 300
  301 SKFNTPWRRF FTSLPVYAII VANFCRSWTF YLLLISQPAY FEEVFGFAIS KVGLLSAVPH 360
  361 MVMTIVVPIG GQLADYLRSR KILTTTAVRK IMNCGGFGME ATLLLVVGFS HTKGVAISFL 420
  421 VLAVGFSGFA ISGFNVNHLD IAPRYASILM GISNGVGTLS GMVCPLIVGA MTKHKTREEW 480
  481 QNVFLIAALV HYSGVIFYGV FASGEKQDWA DPENLSEEKC GIIDQDELAE ETELNHEAFV 540
  541 SPRKKMSYGA TTQNCEVQKT DRRQQRESAF EGEEPLSYQN EEDFSETS