YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CXD2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEWTILERL LEAAVQQHST MIGRILLTVV VIFRILIVAI VGETVYDDEQ TMFVCNTLQP  60
   61 GCNQACYDRA FPISHIRYWV FQIIMVCTPS LCFITYSVHQ SAKQRERRYS TVFLALDRDP 120
  121 AESIGGPGGT GGGGSGGSKR EDKKLQNAIV NGVLQNTETT SKETEPDCLE VKELAPHPSG 180
  181 LRTAARSKLR RQEGISRFYI IQVVFRNALE IGFLVGQYFL YGFSVPGLYE CNRYPCIKEV 240
  241 ECYVSRPTEK TVFLVFMFAV SGICVVLNLA ELNHLGWRKI KLAVRGAQAK RKSVYEIRNK 300
  301 DLPRVSVPNF GRTQSSDSAY V

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	42	0.94
Non-Cytoplasmic	43	77	0.97
Transmembrane Helix	78	98	0.95
Cytoplasmic	99	197	0.98
Transmembrane Helix	198	220	0.87
Non-Cytoplasmic	221	252	0.94
Transmembrane Helix	253	275	0.88
Cytoplasmic	276	321	0.97