YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FADS3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGVGEPGGG PGPREGPAPL GAPLPIFRWE QIRQHDLPGD KWLVIERRVY DISRWAQRHP  60
   61 GGSRLIGHHS AEDATDAFHA FHQDLHFVRK FLKPLLIGEL APEEPSQDGA QNAQLIEDFR 120
  121 ALRQAAEDMK LFEADTTFFA LLLGHILAME LLAWLLVYLL GPGWVSSVLA ALILAISQAQ 180
  181 CWCLQHDLGH ASIFPKSRWN HVAQQFVMGQ LKGFSAHWWN FRHFQHHAKP NIFHKDPDVT 240
  241 VAPVFLLGES SVEYGKKKRR YLPYNHQHLY FFLIGPPLLT LVNFEVENLA YMLVCMQWTD 300
  301 LLWAASFYSR FFLSYSPFYG ATGTLLLFVA VRVLESHWFV WITQMNHIPK EIGHEKHRDW 360
  361 ASSQLAATCN VEPSLFIDWF SGHLNFQIEH HLFPTMPRHN YRRVAPLVKA FCAKHGLHYE 420
  421 VKPFLTALVD IIGSLKKSGD IWLDAYLHQ

Type	Start	End	Confidence
Cytoplasmic	1	136	0.97
Transmembrane Helix	137	158	0.85
Non-Cytoplasmic	159	163	0.60
Transmembrane Helix	164	184	0.83
Cytoplasmic	185	267	0.91
Transmembrane Helix	268	286	0.82
Non-Cytoplasmic	287	310	0.75
Transmembrane Helix	311	334	0.81
Cytoplasmic	335	449	0.86