YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MOT8_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	103	0.95
Transmembrane Helix	104	124	0.92
Non-Cytoplasmic	125	148	0.88
Transmembrane Helix	149	170	0.90
Cytoplasmic	171	177	0.72
Transmembrane Helix	178	196	0.93
Non-Cytoplasmic	197	203	0.79
Transmembrane Helix	204	226	0.90
Cytoplasmic	227	233	0.88
Transmembrane Helix	234	256	0.92
Non-Cytoplasmic	257	265	0.83
Transmembrane Helix	266	290	0.82
Cytoplasmic	291	326	0.96
Transmembrane Helix	327	348	0.90
Non-Cytoplasmic	349	361	0.88
Transmembrane Helix	362	381	0.94
Cytoplasmic	382	392	0.86
Transmembrane Helix	393	412	0.94
Non-Cytoplasmic	413	417	0.79
Transmembrane Helix	418	442	0.88
Cytoplasmic	443	452	0.85
Transmembrane Helix	453	474	0.92
Non-Cytoplasmic	475	483	0.83
Transmembrane Helix	484	506	0.92
Cytoplasmic	507	545	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALPSPASEE AEGPCQEANQ EYQEPVCSPV PEPEPEPEPE PEPEPEPVPV PPPEPQPEPE  60
   61 PQPLPDPAPL PVLGFEAEPV QEPEPTPTVE TRGTARGFQP PEGGFGWIVV FAATWCNGSI 120
  121 FGIHNSVGIL YSMLLEEEKE KNRQVEFQAA WVGALAMGMI FFCSPIVSIF TDRLGCRITA 180
  181 TTGAAVAFIG LHTSSFTSPL SLRYFTYGIL FGCGCSFAFQ PSLVILDHYF QRRLGLANGV 240
  241 VSAGSSIFSM SFPFLIKMLG DRIKLAQTFQ VLSTFMFVLT LLSLTYRPLL PSSQDTPSKR 300
  301 GAHTLRQRFL VQFRKYFNMR VFRQRTYRIW AFGIAAAALG YFVPYVHLMK YVEDKFKEIK 360
  361 ETWVLLVCIG ATSGLGRLVS GHISDSIPGL KKIYLQVLSF LLLGLMSMMI PLCRDFGGLI 420
  421 VVCLFLGLCD GFFITIMAPI AFELVGPMQA SQAIGYLLGM MALPMIAGPP IAGLLRNCFG 480
  481 NYHVAFYFAG VPPIIGAVIL FFVPLMHQRM FKKEQRESSK DKMLSHDPDP NGELLPGSPT 540
  541 PEEPI