YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15420315
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPVLLILMG ASATLHADLL SPEKFLLLPP VNFTIKATGL AQVPLHWDPN PDQDPVDLKY  60
   61 HVKINVPQED EYDTKNTESK CVTPLHEGFA ASVRTILKSI HSPLASSWVS AELKAPPGSS 120
  121 GTSVMNLTCT TNTVKSSHTH FRPYQVSLRC TWLVGKDAPE DTQYFLYYRF SVWTEECQEY 180
  181 SRDALNRNIA CWFPRTFINS KGFEQLAVHI NGSSKHAAIK PLDQLFTLYA IDQVNPPMNV 240
  241 TVEIENNSLY IQWGKPLSAF PVHCFKYKLK IYNTKNGYSQ MENLVTNKFI SKIDDVSTYS 300
  301 IQVRAAVSSP CRMSGSWGEW SQPIYVGKKK KPLVEWHLIV LPTAICFILL IFSLICRVYH 360
  361 LWTRLFPPVP APKSSIKDLP VVTEYEKPPW NETKIEIVHF VEEDGFEVME NSMF

Type	Start	End	Confidence
Signal Peptide	1	17	0.99
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	337	0.99
Transmembrane Helix	338	359	0.85
Cytoplasmic	360	414	0.92