YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	G6PC_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEERMNVLHD FGIQSTRYLQ VNYEDSQDWF VLVSVIADLR NAFYVLFPIW FHIQETVGIN  60
   61 LLWVAVVGDW FNLVFKWILF GQRPYWWVLD TDYYSNSSVP LIKQFPVTCE TGPGSPSGHA 120
  121 MGTAGVYYVM VTSTLAIFRG KKKSTYGFRC LNVVLWLGYW AVQLNVCLSR IYLAAHFPHQ 180
  181 VVAGVLSGIA VAETFSHIRG IYNASLQRYC LITFFLFGFA LGFYLLLKGL GVDLLWTLEK 240
  241 AKRWCERPEW VHLDTTPFAS LFKNLGTLLG LGLALNSSMY RKSCKGELRK SLPFRLACIV 300
  301 ASLGLLHLFD SLKPPSQIES IFYILSFCKS ATVPFASVSL IPYCLARLLG QTHKKSL

Type	Start	End	Confidence
Cytoplasmic	1	58	0.70
Transmembrane Helix	59	79	0.88
Non-Cytoplasmic	80	119	0.91
Transmembrane Helix	120	138	0.92
Cytoplasmic	139	147	0.80
Transmembrane Helix	148	167	0.83
Non-Cytoplasmic	168	178	0.57
Transmembrane Helix	179	198	0.89
Cytoplasmic	199	208	0.77
Transmembrane Helix	209	227	0.97
Non-Cytoplasmic	228	258	0.94
Transmembrane Helix	259	280	0.89
Cytoplasmic	281	290	0.96
Transmembrane Helix	291	309	0.94
Non-Cytoplasmic	310	322	0.82
Transmembrane Helix	323	346	0.78
Cytoplasmic	347	357	0.80