YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GTR5_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.91
Transmembrane Helix	12	32	0.92
Non-Cytoplasmic	33	69	0.94
Transmembrane Helix	70	92	0.90
Cytoplasmic	93	100	0.82
Transmembrane Helix	101	121	0.92
Non-Cytoplasmic	122	126	0.85
Transmembrane Helix	127	149	0.91
Cytoplasmic	150	158	0.86
Transmembrane Helix	159	181	0.89
Non-Cytoplasmic	182	190	0.84
Transmembrane Helix	191	212	0.92
Cytoplasmic	213	274	0.97
Transmembrane Helix	275	297	0.90
Non-Cytoplasmic	298	314	0.92
Transmembrane Helix	315	335	0.94
Cytoplasmic	336	342	0.84
Transmembrane Helix	343	364	0.94
Non-Cytoplasmic	365	372	0.73
Transmembrane Helix	373	397	0.80
Cytoplasmic	398	409	0.85
Transmembrane Helix	410	432	0.90
Non-Cytoplasmic	433	438	0.75
Transmembrane Helix	439	458	0.95
Cytoplasmic	459	502	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKEDQEKTG KLTLVLALAT FLAAFGSSFQ YGYNVAAVNS PSEFMQQFYN DTYYDRNKEN  60
   61 IESFTLTLLW SLTVSMFPFG GFIGSLMVGF LVNNLGRKGA LLFNNIFSIL PAILMGCSKI 120
  121 AKSFEIIIAS RLLVGICAGI SSNVVPMYLG ELAPKNLRGA LGVVPQLFIT VGILVAQLFG 180
  181 LRSVLASEEG WPILLGLTGV PAGLQLLLLP FFPESPRYLL IQKKNESAAE KALQTLRGWK 240
  241 DVDMEMEEIR KEDEAEKAAG FISVWKLFRM QSLRWQLIST IVLMAGQQLS GVNAIYYYAD 300
  301 QIYLSAGVKS NDVQYVTAGT GAVNVFMTMV TVFVVELWGR RNLLLIGFST CLTACIVLTV 360
  361 ALALQNTISW MPYVSIVCVI VYVIGHAVGP SPIPALFITE IFLQSSRPSA YMIGGSVHWL 420
  421 SNFIVGLIFP FIQVGLGPYS FIIFAIICLL TTIYIFMVVP ETKGRTFVEI NQIFAKKNKV 480
  481 SDVYPEKEEK ELNDLPPATR EQ