YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21392392
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPKAPQLRR RERQGEEQEN GACGEGNTRT HRAPDLVQWT RHMEAVKTQC LEQAQRELAE  60
   61 LMDRAIWEAV QAYPKQDRPL PSTASDSTRK TQELHPGKRK VFITRKSLLD ELMEVQHFRT 120
  121 IYHMFIAGLC VLIISTLAID FIDEGRLMLA FDLLLFSFGQ LPLALMMWVP MFLSTLLLPY 180
  181 QTLRLWARPR SGGAWTLGAS LGCVLLAAHA AVLCVLPVHV SVKHELPPAS RCVLVFEQVR 240
  241 FLMKSYSFLR ETVPGIFCVR GGKGICTPSF SSYLYFLFCP TLIYRETYPR TPSIRWNYVA 300
  301 KNFAQALGCL LYACFILGRL CVPVFANMSR EPFSTRALLL SILHATGPGI FMLLLIFFAF 360
  361 LHCWLNAFAE MLRFGDRMFY RDWWNSTSFS NYYRTWNAVV HDWLYSYVYQ DGLWLLGRQG 420
  421 RGAAMLGVFL VSALVHEYIF CFVLGFFYPV MLILFLVVGG LLNFTMNDRH TGPAWNILMW 480
  481 TFLFLGQGIQ VSLYCQEWYA RRHCPLPQPT FWELVTPRSW SCHP

Type	Start	End	Confidence
Cytoplasmic	1	120	0.96
Transmembrane Helix	121	142	0.92
Non-Cytoplasmic	143	157	0.83
Transmembrane Helix	158	180	0.83
Cytoplasmic	181	192	0.83
Transmembrane Helix	193	213	0.91
Non-Cytoplasmic	214	264	0.87
Transmembrane Helix	265	284	0.57
Cytoplasmic	285	302	0.54
Transmembrane Helix	303	326	0.85
Non-Cytoplasmic	327	341	0.57
Transmembrane Helix	342	365	0.87
Cytoplasmic	366	427	0.52
Transmembrane Helix	428	462	0.79
Non-Cytoplasmic	463	473	0.46
Transmembrane Helix	474	494	0.83
Cytoplasmic	495	524	0.61