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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: BRNP3_RAT
Protein type: Transmembrane
Type Confidence: 0.53
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIWRRRAGAE LSSLMALWEW IVLSLHCWVL AVAAVSDQHA TSPFDWLLSD KGPFHRSQEY  60
   61 TDFVDRSRQG FSTRYKIYRE FGRWKVNNLA VERRNFLGSP LPLAPEFFRN IRLLGRRPTL 120
  121 QQITENLIKK YGTHFLLSAT LGGEESLTIF VDKRKLSKRP EGSETSTNSS SVTLETLHQL 180
  181 AASYFIDRDS TLRRLHHIQI ASTAIKVTET RTGPLGCSNY DNLDSVSSVL VQSPENKIQL 240
  241 QGLQVLLPDY LQERFVQAAL SYIACNSEGE FICKENDCWC LCGPKFPECN CPSMDIQAME 300
  301 ENLLRITETW KAYNSDFEDS DEFKFFMKRL PMNYFLNTST IMHLWTMDSN FQRRYEQLEN 360
  361 SMKQLFLKAH RIVHKLFSLS KRCHKQPLIS LPRQRTSTYW LTRIQSFLYC NENGLLGSFS 420
  421 EETHSCTCPN DQVVCTAFLP CTVGDASACL TCAPDNRTRC GTCNTGYMLS QGLCKPEVAE 480
  481 STDHYIGFET DLQDLEMKYL LQKTDRRIEV HAIFISNDMR LNSWFDPSWR KRMLLTLKSN 540
  541 KYKSSLVHMI LGLSLQICLT KNSTLEPVLA VYINPFGGSH SESWFMPVSE SSFPDWERTK 600
  601 LDLPLQCYNW TLTLGNKWKT FFETVHIYLR SRIKANGPNS NESIYYEPLE FIDPSRNLGY 660
  661 MKINNIQVFG YSMHFDPEAI RDLILQLDYP YTQGSQDSAL LQLLEIRDRV NKLSPPGQRR 720
  721 LDLFSCLLRH RLKLSTSEVV RIQSALQAFN AKLPNTVDYD TTKLCS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle