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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|20162485, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPRTPLTLC VLLSQVLLVT SAGDLDCTPG FQQKVLHIHQ PAEFIEDQPV LNLTFSDCKG  60
   61 NKKLHYEVSS PYFKVNSDGT LVAVRNITAV GRTLFVHART PHAEDMAELV IVGGKDIQGS 120
  121 LQDIFKFART SPVPRQKRSI VVSPILIPEN QRQPFPRDVG KVVDSDRPEG SKFRLTGKGV 180
  181 DQDPKGTFRI NENTGSVSVT RTLDRETIAT YQLFVETTDA SGRTLEGPVP LEVIVIDQND 240
  241 NRPIFREGPY IGHVMEGSPT GTTVMRMTAF DADDPATDNA LLRYNIRQQT PDKPSPNMFY 300
  301 IDPEKGDIVT VVSPALLDRE TLENPKYELI IEAQDMAGLD VGLTGTATAT IVIDDKNDHS 360
  361 PKFTKKEFQA TVEEGAVGVI VNLTVEDKDD PATGAWRAAY TIINGNPGQS FEIHTNPQTN 420
  421 EGMLSVVKPL DYEISAFHTL LIKVENEDPL VPDVSYGPSS TATVHITVLD VNEGPVFYPD 480
  481 PMMVTKQENI SVGSVLLTVN ATDPDSLQHQ TIRYSVYKDP AGWLSINPIN GTVDTTAVLD 540
  541 RESPFVHNSV YTALFLAIDS GNPPATGTGT LMITLEDVND NAPVIYPTVA EVCDDARNLS 600
  601 VVILGASDKD LHPNTDPFKF EIHKQTVPDK VWKISKINNT HALVSLLQNL NKANYNLPIM 660
  661 VTDSGKPPMT NITDLRVQVC SCKNSKVDCN AAGTLHLSLS LLLLFSLLSL LSGL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle