YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCPDL_RAT
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATEQRPFQL VVFGASGFTG QFVTEEVARE QMASEQSSRL PWAVAGRSKE KLQQVLEKAA  60
   61 QKLGRATLSS EVGIIICDIS NPASLDEMAK KATLVLNCVG PYRFYGEPVV KACIENGTSC 120
  121 IDICGEPQFL ELMHVKYHEK AAEKGVYIIG SSGFDSIPAD LGVLYTRNQM NGTLTAVESF 180
  181 LTINSGPEGL CIHDGTWKSA IYGFGDKGSL RKLRSVSNLK PVPVIGSKLK RRWPVSYCRE 240
  241 LNSYAIPFLG SDMSVVKRTQ RYLHENLEDS PVQYAAYITV GGITSVIKLM FAGLFFLFFV 300
  301 KFSIGRQLLV KFPWLFSFGY FSKRGPTQKQ MDESSFTMTF FGQGYSHGVS AEKNKPNIRI 360
  361 CTQVKGPEAG YVATPIAMVQ AAVTFLNDAS DLPKGGGVFT PGAAFSRTKL IDRLNQHGIQ 420
  421 FSVISSSEV

Type	Start	End	Confidence
Non-Cytoplasmic	1	274	0.81
Transmembrane Helix	275	299	0.78
Cytoplasmic	300	429	0.69