YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	A4GAT_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGISRSDLEE TMSKPPDCLP RMLRGTPRQR VFTLFIISFK FTFLVSILIY WHTVGAPKDQ  60
   61 RRQYSLPVDF PCPQLAFPRV SAPGNIFFLE TSDRTNPSFL FMCSVESAAR AHPESQVVVL 120
  121 MKGLPRDTTA WPRNLGISLL SCFPNVQIRP LDLQELFEDT PLAAWYLEAQ HRWEPYLLPV 180
  181 LSDASRIALL WKFGGIYLDT DFIVLKNLRN LTNMLGIQSR YVLNGAFLAF ERKHEFLALC 240
  241 IRDFVAHYNG WIWGHQGPQL LTRVFKKWCS IHSLKESRAC RGVTALPPEA FYPIPWQNWK 300
  301 KYFEDVSPEE LAQLLNATYA VHVWNKKSQG THLEATSRAL LAQLHARYCP TTHRAMTMYL 360
  361

Type	Start	End	Confidence
Cytoplasmic	1	30	0.97
Transmembrane Helix	31	53	0.95
Non-Cytoplasmic	54	360	0.98