YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19386562
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METFTNDRLQ LPRNMIENSM FEEEPDVVDL AKEPCLHPLE PDEVEYEPRG SRLLVRGLGE  60
   61 HEMDEDEEDY ESSAKLLGMS FMNRSSGLRN SATGYRQSPD GTCSVPSART LVICVFVIVV 120
  121 AVSVIMVIYL LPRCTFTKEG CHKTNQSAEL IQPIATNGKV FPWAQIRLPT AIIPQRYELS 180
  181 LHPNLTSMTF RGSVTISLQA LQDTRDIILH SAGHNISSVT FMSAVSSQEK QVEILEYPYH 240
  241 EQIAVVAPES LLTGHNYTLK IEYSANISNS YYGFYGITYT DKSNEKKNFA ATQFEPLAAR 300
  301 SAFPCFDEPA FKATFIIKIT RDEHHTALSN MPKVLGLEGE RFG

Type	Start	End	Confidence
Cytoplasmic	1	109	0.83
Transmembrane Helix	110	130	0.90
Non-Cytoplasmic	131	343	0.88