YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SFXN3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDLPLNINI QEPRWDQSTF LGRARHFFTV TDPRNLLLSG KQLEASRNIV QNYRAGVVTP  60
   61 GLTEDQLWRA KYVYDSAFHP DTGEKVVLIG RMSAQVPMNM TITGCMLTFY RKTPTVVFWQ 120
  121 WVNQSFNAIV NYSNRSGDAP ITVQQLGTAY VSATTGAVAT ALGLKSLTKH LPPLVGRFVP 180
  181 FAAVAAANCI NIPLMRQREL QVGIPVTDEA GQRLGHSVTA AKQGIFQVVV SRIGMAIPAM 240
  241 AIPPVIMNTL EKKDFLKRRP WLGAPLQVGL VGFCLVFATP LCCALFPQRS SIHVTRLEPE 300
  301 LRAQIQAQKP SIDVVYYNKG L

Type	Start	End	Confidence
Cytoplasmic	1	95	0.77
Transmembrane Helix	96	111	0.37
Non-Cytoplasmic	112	145	0.55
Transmembrane Helix	146	164	0.61
Cytoplasmic	165	173	0.63
Transmembrane Helix	174	195	0.71
Non-Cytoplasmic	196	227	0.64
Transmembrane Helix	228	247	0.77
Cytoplasmic	248	262	0.63
Transmembrane Helix	263	287	0.84
Non-Cytoplasmic	288	321	0.72