YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	JAM1_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTEGKAGSK LLFLFTSMIL GSLVQGKGSV YSPQTAVQVP ENDSVKLPCI YSGFSSPRVE  60
   61 WKFVQGSTTA LVCYNNQITV PYADRVTFSS SGITFSSVTR KDNGEYTCMV SEDGGQNYGE 120
  121 VSIHLTVLVP PSKPTVSIPS SVTIGNRAVL TCSEHDGSPP SEYSWFKDGV PMLTADAKKT 180
  181 RAFINSSYTI DPKSGDLVFD PVSAFDSGEY YCEAQNGYGT AMRSEAVRME AVELNVGGIV 240
  241 AAVLVTLILL GLLIFGIWFA YSRGYFERTK KGTAPGKKVI YSQPSARSEG EFKQTSSFLV 300
  301

Type	Start	End	Confidence
Signal Peptide	1	26	0.96
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	237	0.98
Transmembrane Helix	238	261	0.94
Cytoplasmic	262	300	0.98