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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|19743730, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFEEGLNGT ADKNFSKMGK KSKKEKEKKP AVGIFGMFRY ADWLDKLCMA LGTLAAIIHG  60
   61 TLLPLLMLVF GYMTDSFTQA ETRILPSVTN QSEINSTQTV SDSSLEEDMA MYAYYYTGIG 120
  121 AGVLIVAYIQ VSLWCLAAGR QIHKIRQKFF HAIMNQEIGW FDVNDAGELN TRLTDDVSKI 180
  181 NDGIGDKLGM FFQSITTFSA GFIIGFISGW KLTLVILAVS PLIGLSSAMW AKVLTSFTNK 240
  241 ELQAYAKAGA VAEEVLAAIR TVIAFGGQKK ELERYNKNLE EAKRVGIKKA ITANISIGIA 300
  301 YLLVYASYAL AFWYGTSLVL SNEYSIGQVL TVFFSILLGT FSIGHLAPNI EAFANARGAA 360
  361 YEIFKIIDNE PSIDSFSTKG HKPDSIMGNL EFKNVYFNYP SRSEVKILKG LNLKVKSGQT 420
  421 VALVGNSGCG KSTTVQLLQR LYDPIEGEVS IDGQDIRTIN VRYLREIIGV VSQEPVLFAT 480
  481 TIAENIRYGR ENVTMDEIEK AVKEANAYDF IMKLPHKFNT LVGERGAQLS GGQKQRIAIA 540
  541 RALVRNPKIL LLDEATSALD TESEAVVQAA LDKAREGRTT IVIAHRLSTV RNADVIAGFD 600
  601 GGVIVEQGNH EELMKEKGIY FKLVMTQTRG NEIEPGNNAY ESQSDTGASE LTSEKSKSPL 660
  661 IRRSIRRSIH RRQDQERRLS SKEDVDEDVP MVSFWQILKL NISEWPYLVV GVLCAVINGC 720
  721 IQPVFAIVFS KIVGVFSRDD DHETKQRNCN LFSLLFLVMG MISFVTYFFQ GFAFGKAGEI 780
  781 LTKRLRYMVF KSMLRQDISW FDDHKNTTGS LTTRLASDAS NVKGAMGSRL AVVTQNVANL 840
  841 GTGIILSLVY GWQLTLLLVV IIPLIVLGGI IEMKLLSGQA LKDKKELEIS GKIATEAIEN 900
  901 FRTVVSLTRE QKFETMYAQS LQIPYRNALK KAHVFGITFA FTQAMIYFSY AACFRFGAYL 960
  961 VARELMTFEN VMLVFSAVVF GAMAAGNTSS FAPDYAKAKV SASHIIRIIE KIPEIDSYST1020
 1021 EGLKPNWLEG NVKFNGVMFN YPTRPNIPVL QGLSFEVKKG QTLALVGSSG CGKSTVVQLL1080
 1081 ERFYNPMAGT VFLDGKEIKQ LNVQWLRAHL GIVSQEPILF DCSITENIAY GDNSRVVSHE1140
 1141 EIVRAAREAN IHQFIDSLPE KYNTRVGDKG TQLSGGQKQR IAIARALVRQ PHILLLDEAT1200
 1201 SALDTESEKV VQEALDKARE GRTCIVIAHR LSTIQNADLI VVIQNGQVKE HGTHQQLLAQ1260
 1261 KGIYFSMVQA GAKRS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle