YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62025010, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSALAFVLL VLNISLLKGQ SPPGKPEIHK CRSPDKETFT CWWNPGTDGG LPTNYSLTYS  60
   61 KEGEKTTYEC PDYKTSGPNS CFFSKQYTSI WKIYIITVNA TNQMGSSSSD PLYVDVTYIV 120
  121 EPEPPRNLTL EVKQLKDKKT YLWVKWSPPT ITDVKTGWFT MEYEIRLKPE EAEEWEIHFT 180
  181 GHQTQFKVFD LYPGQKYLVQ TRCKPDHGYW SRWSQESSVE MPNDFTLKDT TVWIIVAILS 240
  241 AVICLIMVWA VALKGYSMMT CIFPPVPGPK IKGFDTHLLE TGSPSKYKVD LYLALPGGFQ 300
  301 KLDNAGELDY

Type	Start	End	Confidence
Signal Peptide	1	19	0.95
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	230	0.99
Transmembrane Helix	231	253	0.92
Cytoplasmic	254	310	0.98