YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PKR1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METTVGTLGE NTTNTFTDFF SARDGSGAET SPLPFTFSYG DYDMPSDEEE DVTNSRTFFA  60
   61 AKIVIGMALV GIMLVCGIGN FIFITALARY KKLRNLTNLL IANLAISDFL VAIVCCPFEM 120
  121 DYYVVRQLSW EHGHVLCASV NYLRTVSLYV STNALLAIAI DRYLAIVHPL RPRMKCQTAA 180
  181 GLIFLVWSVS ILIAIPAAYF TTETVLVIVE SQEKIFCGQI WPVDQQFYYR SYFLLVFGLE 240
  241 FVGPVIAMTL CYARVSRELW FKAVPGFQTE QIRRRLRCRR RTVLGLVCVL SAYVLCWAPF 300
  301 YGFTIVRDFF PSVFVKEKHY LTAFYVVECI AMSNSMINTL CFVTVRNNTS KYLKRILRLQ 360
  361 WRASPSGSKA SADLDLRTTG IPATEEVDCI RLK

Type	Start	End	Confidence
Non-Cytoplasmic	1	62	0.88
Transmembrane Helix	63	87	0.88
Cytoplasmic	88	98	0.76
Transmembrane Helix	99	120	0.84
Non-Cytoplasmic	121	144	0.76
Transmembrane Helix	145	165	0.78
Cytoplasmic	166	177	0.90
Transmembrane Helix	178	200	0.90
Non-Cytoplasmic	201	230	0.96
Transmembrane Helix	231	253	0.93
Cytoplasmic	254	281	0.97
Transmembrane Helix	282	303	0.94
Non-Cytoplasmic	304	322	0.91
Transmembrane Helix	323	345	0.77
Cytoplasmic	346	393	0.83