YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VAMP7_RAT
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILFAVVAR GTTILAKHAW CGGNFLEVTE QILAKIPSEN NKLTYSHGNY LFHYICQDRI  60
   61 VYLCITDDDF ERSRAFGFLN EVKKRFQTTY GSRAQTALPY AMNSEFSSVL AAQLKHHSEN 120
  121 QSLDRVTETQ AQVDELKGIM VRNIDLVAQR GERLELLIDK TENLVDSSVT FKTTSRNLAR 180
  181 AMCVKNVKLT AIIVVVSIVF IYIIVSPLCG GFTWPSCVKK

Type	Start	End	Confidence
Cytoplasmic	1	185	0.89
Transmembrane Helix	186	206	0.87
Non-Cytoplasmic	207	220	0.77