YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LRAT_RAT
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNSMLEAAS LLLEKLLLIS NFKIFSVCAP GGGTGKKHPY EINSFLRGDV LEVSRTHFTH  60
   61 YGIYLGDNRV AHLMPDILLA LTSDKERTQK VVSNKRLLPG VICKVASIRV DTVEDFAYGA 120
  121 DILVNHLDET LKKKSLLNEE VARRAEQQLG LTPYSLLWNN CEHFVTYCRY GSPISPQAEK 180
  181 FHETVKILIR DQRSCLASAV LGLVSIIYTG LASYMTLPAV CIPFCLWMMS G

Type	Start	End	Confidence
Cytoplasmic	1	195	0.80
Transmembrane Helix	196	222	0.79
Non-Cytoplasmic	223	231	0.65