YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PSB7_RAT
Protein type:	Transmembrane
Type Confidence:	0.53
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVSVFQAP VGGFSFDNCR RNAVLEADFA KKGFKLPKAR KTGTTIAGVV YKDGIVLGAD  60
   61 TRATEGMVVA DKNCSKIHFI SPNIYCCGAG TAADTDMTTQ LISSNLELHS LTTGRLPRVV 120
  121 TANRMLKQML FRYQGYIGAA LVLGGVDVTG PHLYSIYPHG STDKLPYVTM GSGSLAAMAV 180
  181 FEDKFRPDME EEEAKKLVSE AIAAGIFNDL GSGSNIDLCV ISKSKLDFLR PYSVPNKKGT 240
  241 RFGRYRCEKG TTAVLTEKVT PLELEVLEEI VQTMDTS

Type	Start	End	Confidence
Cytoplasmic	1	132	0.52
Transmembrane Helix	133	150	0.50
Non-Cytoplasmic	151	277	0.69