YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HRG1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPTRLQLGV RAAYSGFSSL AGFSIFFVWT VVYRQPGTAA MGGLAGVLAL WVLVTHVMYM  60
   61 QDYWRTWLRG LRGFFFVGAL FSAVSFSAFC TFLTLAITQH QSFKDPNSYY LSCVWSFISF 120
  121 KWAFLLSLYA HRYRADFADI SILSDF

Type	Start	End	Confidence
Cytoplasmic	1	9	0.93
Transmembrane Helix	10	32	0.89
Non-Cytoplasmic	33	38	0.79
Transmembrane Helix	39	59	0.94
Cytoplasmic	60	72	0.88
Transmembrane Helix	73	97	0.91
Non-Cytoplasmic	98	107	0.88
Transmembrane Helix	108	130	0.81
Cytoplasmic	131	146	0.91