YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CXCR5_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSPISLDMG AITYNMDDLY KELAIYSNST EIPLQDSIFC STEEGPLLTS FKTIFMPVAY  60
   61 SLIFLLGMMG NILVLVILER HRHTRSSTET FLFHLAVADL LLVFILPFAV AEGSVGWVLG 120
  121 TFLCKTVIAL HKINFYCSSL LLACIAVDRY LAIVHAVHAY RRRRLLSIHI TCSTIWLAGF 180
  181 LFALPELLFA KVVQPHNNES LPQCIFSQEN EAETRAWFAS RFLYHTGGFL LPMLVMAWCY 240
  241 VGVVHRLLQA QRRPQRQKAV RVAILVTSIF LLCWSPYHIV IFLDTLERLK AVNSSCELSG 300
  301 YLSVAITLCE FLGLAHCCLN PMLYTFAGVK FRSDLSRLLT KLGCAGPASL CQLFPGWRKS 360
  361 SLSESENATS LTTF

Type	Start	End	Confidence
Non-Cytoplasmic	1	55	0.97
Transmembrane Helix	56	78	0.92
Cytoplasmic	79	89	0.95
Transmembrane Helix	90	111	0.91
Non-Cytoplasmic	112	131	0.79
Transmembrane Helix	132	152	0.86
Cytoplasmic	153	164	0.89
Transmembrane Helix	165	185	0.91
Non-Cytoplasmic	186	223	0.92
Transmembrane Helix	224	244	0.91
Cytoplasmic	245	258	0.86
Transmembrane Helix	259	281	0.89
Non-Cytoplasmic	282	301	0.90
Transmembrane Helix	302	324	0.78
Cytoplasmic	325	337	0.78
Transmembrane Helix	338	357	0.45
Non-Cytoplasmic	358	374	0.54