YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TA2R_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWLNSTSLGA CFRPVNITLQ ERRAIASPWF AASFCALGLG SNLLALSVLA GARPGAGPRS  60
   61 SFLALLCGLV LTDFLGLLVT GAVVASQHAA LLDWRATDPG CRLCHFMGAA MVFFGLCPLL 120
  121 LGAAMAAERF VGITRPFSRP AATSRRAWAT VGLVWVGAGT LGLLPLLGLG RYSVQYPGSW 180
  181 CFLTLGAERG DVAFGLMFAL LGSVSVGLSL LLNTVSVATL CRVYHAREAT QRPRDCEVEM 240
  241 MVQLVGIMVV ATVCWMPLLV FILQTLLQTL PVMSPSGQLL RTTERQLLIY LRVATWNQIL 300
  301 DPWVYILFRR SVLRRLHPRF TSQLQAVSLH SPPTQAMLSG P

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.90
Transmembrane Helix	29	50	0.90
Cytoplasmic	51	61	0.83
Transmembrane Helix	62	85	0.91
Non-Cytoplasmic	86	105	0.86
Transmembrane Helix	106	127	0.92
Cytoplasmic	128	146	0.89
Transmembrane Helix	147	169	0.92
Non-Cytoplasmic	170	195	0.88
Transmembrane Helix	196	221	0.85
Cytoplasmic	222	241	0.87
Transmembrane Helix	242	263	0.92
Non-Cytoplasmic	264	341	0.66