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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|29789036, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.95
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLKVLLATV LTLCHGFNLD TENPMTFQEN ASGFGQSVIQ LGETRVVVAA PQEVKAVNQT  60
   61 GALYQCDYST NRCDPIPLQV PPEAVNMSLG LSLAATTVPP QLLACGPTVH QNCKENTYVN 120
  121 GLCYLFGSNL LRKPQQFPEA LRGCPQQESN IAFLIDGSGS INTIDFQKMK EFVSTVMDQF 180
  181 QKSKTLFSLM QYSDEFRTHF TFNDFKRNPD PKSHVRPIRQ LNGRTKTASG IRKVVRELFQ 240
  241 KINGARDNAA KILVVITDGE KFGDPLNYED VIPEAEEAGI IRYVIGVGNA FHKPQSRREL 300
  301 DTIASKPAGD HVFQVDNFEA LNTIRNQLQE KIFAIEGTQT GSTSSFEHEM SQEGFSAAIT 360
  361 SNGPLLGSVG SFDWAGGAFL YPSKDKASFI NTTRIDSDMN DAYLGYASAV ISRNRVQSLV 420
  421 LGAPRYQHIG LVVMFKQNFG AWEPHTDIKG SQIGSYFGAS LCSVDMDADG NTNLILIGAP 480
  481 HHYEKTRGGQ VSVCPLPRGR ARWQCEAILH GDQGHPWGRF GAALTVLGDV NGDKLTDVAI 540
  541 GAPGEQENQG AVYIFHGASV ASISTPHSQR IAGARFSPGL QYFGQSLSGG KDLTMDGLMD 600
  601 LAVGAQGRLL LIRAQPVLRL EATMEFSPKN LARSVFACQE EVVKNKDAGE VRVCLQVRKN 660
  661 TKDRLREGDI QSTVTYDLAL DPGRSVVRAF FDETKNGILR RIRVFGLTQK CETLKLILPD 720
  721 CVDNSVSPII LRLNYTLVGE PLRSSRDLRP VLAMEAQRIF TAMFPFEKNC GNDTICQDDL 780
  781 SITVSSTRVN TLVVGDSRDF DVSVTLRNDG EDSYGTKVTC YYPSGLSYRK VSASQNQFSK 840
  841 KPWRVIAEPS SSEGQGVLKS TIWDINHPIF PANSEVTFNV TFDVDSDASL GNKLLLKVVV 900
  901 TSENNVSRTD KTESQLELPV KYAIYMVVTS GESSIKYLNF TASEMTSKVI QHQYQFNNLG 960
  961 QRSFPVSVVF WIPVQINKVT IWDPPQVTFS QNLSSVCRTE QKSPSHSKFQ DELERTPVLN1020
 1021 CSVAVCKRIQ CDIPSFNSKE IFNVTLQGNL LFDWYIETSH DHLLLVSTAE ILFNDSAFAL1080
 1081 LPGQETFVKA QTETKVEPYT VHNPVPLIVG SSVGGLVLLA LITAGLYKLG FFKRQYKDMM1140
 1141 NEAGGQDGPP Q

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle