YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPRK_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESPIQIFRG EPGPTCAPSA CLLPNSSSWF PNWAESDSNG SVGSEDQQLE PAHISPAIPV  60
   61 IITAVYSVVF VVGLVGNSLV MFVIIRYTKM KTATNIYIFN LALADALVTT TMPFQSAVYL 120
  121 MNSWPFGDVL CKIVISIDYY NMFTSIFTLT MMSVDRYIAV CHPVKALDFR TPLKAKIINI 180
  181 CIWLLASSVG ISAIVLGGTK VREDVDVIEC SLQFPDDEYS WWDLFMKICV FVFAFVIPVL 240
  241 IIIVCYTLMI LRLKSVRLLS GSREKDRNLR RITKLVLVVV AVFIICWTPI HIFILVEALG 300
  301 STSHSTAVLS SYYFCIALGY TNSSLNPVLY AFLDENFKRC FRDFCFPIKM RMERQSTNRV 360
  361 RNTVQDPASM RDVGGMNKPV

Type	Start	End	Confidence
Non-Cytoplasmic	1	61	0.78
Transmembrane Helix	62	85	0.89
Cytoplasmic	86	95	0.87
Transmembrane Helix	96	117	0.91
Non-Cytoplasmic	118	138	0.82
Transmembrane Helix	139	159	0.82
Cytoplasmic	160	176	0.89
Transmembrane Helix	177	197	0.92
Non-Cytoplasmic	198	228	0.92
Transmembrane Helix	229	251	0.94
Cytoplasmic	252	271	0.95
Transmembrane Helix	272	295	0.91
Non-Cytoplasmic	296	309	0.81
Transmembrane Helix	310	332	0.68
Cytoplasmic	333	380	0.83