YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	IKIP_RAT
Protein type:	Transmembrane
Type Confidence:	0.63
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEVKSRKKP GPKVAAPEPE KRSDGRKNPE ARGGAGWADP RTGLSLLSLA TSLGLAWLVF  60
   61 QQSEKFAKVE NQYRLLQTES SEFQGLQSKI SLISNKLEST ENTLQEATSS MSLMTQFEQE 120
  121 VAGLQRSIHD IENSEEMLTQ KLQNLNEKFQ NITDLWKRTL VEMSDNTAVF KSEAKSTHSE 180
  181 VTLKINSAEQ EIKLLTERLK DLEDSTLRNI RTVSRQEEED LLRVEAQLSS DTKAVEKLEE 240
  241 EQRTLLARDE DLTDKLSSYE PKVEECKAHL PTIENAVHSV LRVSQDLIGT ERKMEELTVQ 300
  301 MFNMEDDMLK AVSEIMEMQN TLEGIQYDNS LLKMQNELVV LKGKVHDFMA YSSAGEKGTL 360
  361 EEYNLENKGT DDY

Type	Start	End	Confidence
Cytoplasmic	1	41	0.57
Transmembrane Helix	42	60	0.61
Non-Cytoplasmic	61	373	0.96