YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PX11A_RAT
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAFIRVANQ SQGRDRLFRA TQHACMLLRY LLESKAGKEA VVTKLKNLET SVSTGRKWFR  60
   61 LGNVLHAIQA TEQSIQATDL VPRLCLTLAN LNRVVYYICD TVLWAKSVGL TSGINREKWQ 120
  121 MRAARHYYYF LLLSLVRDLY EVLLHMGQVA RDRAKREKSS GDPPKYSVAN EESEWLQSFL 180
  181 LLLFQSLKRN PPLFLDTVKN FCDILIPLNQ LGIYKSNLGV VGFGGLVSSV AGLITVVYPQ 240
  241 LKLKAR

Type	Start	End	Confidence
Non-Cytoplasmic	1	217	0.71
Transmembrane Helix	218	238	0.88
Cytoplasmic	239	246	0.68