YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S22A5_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.74
Transmembrane Helix	20	43	0.87
Non-Cytoplasmic	44	141	0.76
Transmembrane Helix	142	161	0.81
Cytoplasmic	162	171	0.71
Transmembrane Helix	172	191	0.85
Non-Cytoplasmic	192	195	0.85
Transmembrane Helix	196	218	0.90
Cytoplasmic	219	227	0.85
Transmembrane Helix	228	250	0.94
Non-Cytoplasmic	251	257	0.79
Transmembrane Helix	258	277	0.97
Cytoplasmic	278	339	0.98
Transmembrane Helix	340	361	0.91
Non-Cytoplasmic	362	371	0.81
Transmembrane Helix	372	394	0.90
Cytoplasmic	395	400	0.90
Transmembrane Helix	401	420	0.92
Non-Cytoplasmic	421	428	0.65
Transmembrane Helix	429	449	0.79
Cytoplasmic	450	460	0.64
Transmembrane Helix	461	482	0.74
Non-Cytoplasmic	483	488	0.70
Transmembrane Helix	489	509	0.91
Cytoplasmic	510	557	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDYDEVTAF LGEWGPFQRL IFFLLSASII PNGFNGMSIV FLAGTPEHRC LVPHTVNLSS  60
   61 AWRNHSIPLE TKDGRQVPQS CRRYRLATIA NFSALGLEPG RDVDLEQLEQ ENCLDGWEYN 120
  121 KDVFLSTIVT EWDLVCKDDW KAPLTTSLFF VGVLMGSFIS GQLSDRFGRK NVLFLTMGMQ 180
  181 TGFSFLQLFS VNFEMFTVLF VLVGMGQISN YVAAFVLGTE ILSKSIRIIF ATLGVCIFYA 240
  241 FGFMVLPLFA YFIRDWRMLL LALTVPGVLC GALWWFIPES PRWLISQGRV KEAEVIIRKA 300
  301 AKFNGIVAPS TIFDPSELQD LNSKKPQSHH IYDLVRTRNI RIITIMSIIL WLTISVGYFG 360
  361 LSLDTPNLHG DIYVNCFLLA AVEVPAYVLA WLLLQHLPRR YSISAALFLG GSVLLFIQLV 420
  421 PSELFYLSTA LVMVGKFGIT SAYSMVYVYT AELYPTVVRN MGVGVSSTAS RLGSILSPYF 480
  481 VYLGAYDRFL PYILMGSLTI LTAILTLFFP ESFGAPLPDT IDQMLRVKGI KQWQIQSQTR 540
  541 TQKDGGESPT VLKSTAF