YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RAMP2_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.90
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPLRVERAP GGSQLAVTSA QRPAALRLPP LLLLLLLLLL GAVSTSPESL NQSHPTEDSL  60
   61 LSKGKMEDYE TNVLPCWYYY KTSMDSVKDW CNWTLISRYY SNLRYCLEYE ADKFGLGFPN 120
  121 PLAESIILEA HLIHFANCSL VQPTFSDPPE DVLLAMIIAP ICLIPFLVTL VVWRSKDGDA 180
  181 QA

Type	Start	End	Confidence
Signal Peptide	1	45	0.98
N-region	1	36
H-region	37	42
C-region	43	45
Cleavage Site	45	46
Non-Cytoplasmic	46	151	0.98
Transmembrane Helix	152	173	0.87
Cytoplasmic	174	182	0.87