YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLCN2_RAT
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	96	0.90
Transmembrane Helix	97	119	0.92
Non-Cytoplasmic	120	139	0.82
Transmembrane Helix	140	162	0.84
Cytoplasmic	163	213	0.65
Transmembrane Helix	214	236	0.82
Non-Cytoplasmic	237	244	0.65
Transmembrane Helix	245	269	0.90
Cytoplasmic	270	280	0.61
Transmembrane Helix	281	300	0.66
Non-Cytoplasmic	301	326	0.97
Transmembrane Helix	327	348	0.93
Cytoplasmic	349	368	0.94
Transmembrane Helix	369	389	0.93
Non-Cytoplasmic	390	431	0.96
Transmembrane Helix	432	451	0.88
Cytoplasmic	452	457	0.73
Transmembrane Helix	458	480	0.85
Non-Cytoplasmic	481	500	0.87
Transmembrane Helix	501	523	0.85
Cytoplasmic	524	533	0.63
Transmembrane Helix	534	551	0.94
Non-Cytoplasmic	552	907	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAATAAAAT VAGEGMEPRA LQYEQTLMYG RYTQELGAFA KEEAARIRLG GPEPWKGSPS  60
   61 ARATPELLEY GQSRCARCRI CSVRCHKFLV SRVGEDWIFL VLLGLLMALV SWAMDYAIAV 120
  121 CLQAQQWMSR GLNTNILLQY LAWVTYPVVL ITFSAGFTQI LAPQAVGSGI PEMKTILRGV 180
  181 VLKEYLTLKT FVAKVIGLTC ALGSGMPLGK EGPFVHIASM CAALLSKFLS LFGGIYENES 240
  241 RNTEMLAAAC AVGVGCCFAA PIGGVLFSIE VTSTFFAVRN YWRGFFAATF SAFIFRVLAV 300
  301 WNRDEETITA LFKTRFRLDF PFDLQELPAF AVIGIASGFG GALFVYLNRK IVQVMRKQKT 360
  361 INRFLMKKRL LFPALVTLLI STLTFPPGFG QFMAGQLSQK ETLVTLFDNR TWVRQGLVED 420
  421 LGAPSTSQAW SPPRANVFLT LVIFILMKFW MSALATTIPV PCGAFMPVFV IGAAFGRLVG 480
  481 ESMAAWFPDG IHTDSSTYRI VPGGYAVVGA AALAGAVTHT VSTAVIVFEL TGQIAHILPV 540
  541 MIAVILANAV AQSLQPSLYD SIIRIKKLPY LPELGWGRHQ QYRVRVEDIM VRDVPHVALS 600
  601 CTFRDLRLAL HRTKGRMLAL VESPESMILL GSIERSQVVA LLGAQLSPAR RRQHMQKLRK 660
  661 AQMSPPSDQE SPPSSETSIR FQVNTEDSGF PGAHGQTHKP LKPALKRGPS NATSLQEGTT 720
  721 GNMESAGIAL RSLFCGSPPL ESTTSELEKS ESCDKRKLKR VRISLASDSD LEGKMSPEEI 780
  781 LEWEEQQLDE PVNFSDCKID PAPFQLVERT SLHKTHTIFS LLGVDHAYVT SIGRLIGIVT 840
  841 LKELRKAIEG SVTAQGVKVR PPLASFRDSA TSSSDTETTE VHALWGPRSR HGLPREGTPS 900
  901 DSDDKCQ