YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	APJ_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDDGYNYYG ADNQSECDYA DWTPSGALIP AIYILVFLLG TTGNGLVLWT VFWSSREKRR  60
   61 SADIFIASLA VADLTFVVTL PLWATYTYRE FDWPFGTFSC KLSSYLIFVN MYASVFCLTG 120
  121 LSFDRYLAIV RPVANARLRL RVSGAVATAV LWVLAALLAV PVMVFRSTDI PENSTKTQCY 180
  181 MDYSMVATSN SEWAWEVGLG VSSTAVGFVV PFIIMLTCYF FIAQTIAGHF RKERIEGLRK 240
  241 RRRLLSIIVV LVVTFALCWM PYHLVKTLYM LGNLLHWPCD FDSFLMNVFP YCTCISYVNS 300
  301 CLNPFLYAFF DPRFRRACTS MLCCDQSGCK GSPHSSSAEK SASYSSGHSQ GPGPNMCKGG 360
  361 EPMHEKSIPY SQETLVD

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.95
Transmembrane Helix	31	53	0.94
Cytoplasmic	54	63	0.91
Transmembrane Helix	64	85	0.95
Non-Cytoplasmic	86	103	0.90
Transmembrane Helix	104	123	0.92
Cytoplasmic	124	141	0.80
Transmembrane Helix	142	164	0.88
Non-Cytoplasmic	165	200	0.96
Transmembrane Helix	201	223	0.92
Cytoplasmic	224	243	0.92
Transmembrane Helix	244	265	0.94
Non-Cytoplasmic	266	286	0.92
Transmembrane Helix	287	307	0.91
Cytoplasmic	308	377	0.94