YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MADCA_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPILALLLA LGPFQLSRGQ SFQVNPPEPE VAVAMGTSLQ INCSMSCDKD IARVHWHGLD  60
   61 TNLGNVQTLP GSRVLSVRGM LSDTGTRVCV GSCGSRSFQH SVKILVYAFP DQLEVTPEFL 120
  121 VPGRDQVVSC TAHNIWPAGP DSLSFALLRG EQSLEGAQAL ETEQEEEMQE TEGTPLFQVT 180
  181 QRWLLPSLGT PALPALYCQV TMQLPKLVLT HRRKIPVLQS QTSPEPPSTT SAKPYILTSS 240
  241 HTTKAVSTGL SSVALPSTPL SSEGPCYPEI HQNPEADWEL LCEASCGSGV TVHWTLAPGD 300
  301 LAAYHKREAG AQAWLSVLPL GPIPEGWFQC RMDPGGQVTS LYVTGQVIPN PSSMVALWIG 360
  361 SLVLGLLALA FLAYCLWKRY RPGPLPDSSS CTLL

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	353	0.99
Transmembrane Helix	354	376	0.94
Cytoplasmic	377	394	0.96