YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SOAT1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	135	0.95
Transmembrane Helix	136	157	0.91
Non-Cytoplasmic	158	177	0.86
Transmembrane Helix	178	198	0.92
Cytoplasmic	199	213	0.81
Transmembrane Helix	214	240	0.81
Non-Cytoplasmic	241	314	0.71
Transmembrane Helix	315	336	0.89
Cytoplasmic	337	355	0.63
Transmembrane Helix	356	380	0.85
Non-Cytoplasmic	381	410	0.58
Transmembrane Helix	411	428	0.46
Cytoplasmic	429	438	0.78
Transmembrane Helix	439	459	0.85
Non-Cytoplasmic	460	464	0.73
Transmembrane Helix	465	485	0.93
Cytoplasmic	486	495	0.77
Transmembrane Helix	496	514	0.80
Non-Cytoplasmic	515	545	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGEETSLRN RLSRSAENPE QDEAQKNLLD THRNGHITMK QLIAKKRQLA AEAEELKPLF  60
   61 LKEVGCHFDD FVTNLIDKSA SLDNGGCALT TFSILEEMKN NHRAKDLRAP PEQGKIFISR 120
  121 RSLLDELFEV DHIRTIYHMF IALLIIFILS TLVVDYIDEG RLVLEFSLLA YAFGQFPIVI 180
  181 WTWWAMFLST LAIPYFLFQR WAHGYSKSSH PLIYSLIHGA FFLVFQLGIL GFIPTYVVLA 240
  241 YTLPPASRFI LILEQIRLVM KAHSYVRENV PRVLSAAKEK SSTVPVPTVN QYLYFLFAPT 300
  301 LIYRDSYPRT PTVRWGYVAM QFLQVFGCLF YVYYIFERLC APLFRNIKQE PFSARVLVLC 360
  361 VFNSILPGVL MLFLSFFAFL HCWLNAFAEM LRFGDRMFYK DWWNSTSYSN YYRTWNVVVH 420
  421 DWLYYYVYKD LLWFFSKRFR PAAMLAVFAL SAVVHEYALA VCLSYFYPVL FVLFMFFGMA 480
  481 FNFIVNDSRK RPVWNIMVRA SLFLGHGVIL CFYSQEWYAR QRCPLKNPTF LDYVRPRTWT 540
  541 CRYVF