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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: LIFR_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.57
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAFSWWRQP SWMADNKRGR MTPSLPWLLS ALTLLHLMMH VNGLKRGVQQ DLKCTTNNMR  60
   61 VWDCSWPAPL GVSPGTVKDI CIKDRPHSCH RLETTNVKIP ALSPGDHEVT INYQNGFQSK 120
  121 FTLNEKDVSL VPDTPEILSL SADFSTSTLQ LKWNDKGSAL PYPSNATWEV KVLQNPRTEP 180
  181 VALVSLNTVL SGKDKGHHWN WTSELPLQCA THSVSIRWHI DYPRFSGYKE WSEWSPLKNI 240
  241 SWTRNTETNV FPQDKVVLAG SNMTICCIST TKVLSGQIGN TFRPLIHLYG ETVAINILNI 300
  301 PVSENSGSNV IFSTVDDVYG TVVFAGYPPD VPQKLSCETH DLKEIICSWN PGRITGLVGP 360
  361 RNTEYTLFES ISGKSAVFHR FEELANETYW LTLKMAPDQE IHNFTLTARN PLGQTESAIV 420
  421 INATERVALH VPISLKVKDV NSTVVTLSWY LPGNFTKINL VCQIEICKAN SKKEVRNVTM 480
  481 RGAEDSTYHV AVDKLNPYTI YTFRVRCSSE TFWKWSKWSN EKRYLTTEAT PSKGPDTWRE 540
  541 WSSDGKNLII YWKPLPINEA NGKILSYNVS CSSSEETQSL SEILDPQHKA EIKVNKNDYI 600
  601 ISVVARNSAG SSPPSKIASM EIPNDDITVE QAVGIGNRIF LSWQHNPNMT CDYVIKWCNS 660
  661 SWSEPCLLDW IKVPSNSTGT VIESDQFQPG VRYNFYLYGC TNQGYQLLRS TIGYIEELAP 720
  721 IVAPNFTVED TSADSILVKW DDIPVEELRG FLRGYLFYFQ KGERDTPKTR SLETSHSDIK 780
  781 LKNITDISQK TLRIADLQGK TSYHLVLRAY THGGLGPEKS MFVVTKENSV GLIIAILIPV 840
  841 AVAVIVGVVT SILCYRKREW IKETFYPDIP NPENCKALQF QKSVCEGSNA LKTLEMNPCT 900
  901 PNHVEVLESR SIPPKIEDTE ITSPVSERPG ESSETDPENQ AAVSYCPPII EEEITNPAAD 960
  961 EAGGASQVVY IDVQSMYQPQ AKAEDEQDTD PVMVAGYKPQ MRLPINPTAE DTTAEDEADK1020
 1021 TAGYRPQANV NTWNLVSPDS PRSTDSNSEV VSFGSPCSIN SRQFLIPPKD EDSPKSNGGG1080
 1081 WSFTNFFQNK PND

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle