YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S26A2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	107	0.99
Transmembrane Helix	108	129	0.89
Non-Cytoplasmic	130	140	0.72
Transmembrane Helix	141	172	0.65
Cytoplasmic	173	220	0.91
Transmembrane Helix	221	239	0.77
Non-Cytoplasmic	240	245	0.48
Transmembrane Helix	246	266	0.75
Cytoplasmic	267	330	0.53
Transmembrane Helix	331	350	0.56
Non-Cytoplasmic	351	377	0.68
Transmembrane Helix	378	400	0.87
Cytoplasmic	401	418	0.65
Transmembrane Helix	419	441	0.76
Non-Cytoplasmic	442	454	0.48
Transmembrane Helix	455	489	0.71
Cytoplasmic	490	512	0.60
Transmembrane Helix	513	544	0.82
Non-Cytoplasmic	545	739	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSENKEQHN LSPRDLPEEA YGFPPELPLG AQRGSSTDLR QFEPSDRRRA FRRIHMELHE  60
   61 KPDTNIRQLV MRKLQKSCQC NATKIRNRIF DFFPVLRWLP KYDLKKNILG DMMSGLIVGI 120
  121 LLVPQSIAYS LLAGQEPIYG LYTSFFASII YFLFGTSRHI SVGIFGILCL MIGEVVDREL 180
  181 HKACPDIDTT SSSIAMFSNG CVVVNHTLDG LCDKSCYAIK IGSTVTFMAG VYQVAMGFFQ 240
  241 VGFVSVYLSD ALLSGFVTGA SFTILTSQAK YLLGLSLPRS NGVGSVITTW IHIFRNIHKT 300
  301 NICDLITSLL CLLVLVPTKE LNEYFKSKLP APIPTELIVV VAATLASHFG KLNENYNSSI 360
  361 AGQIPTGFMP PQAPDWSLIP NVAVDAIAIS IIGFAITVSL SEMFAKKHGY TVKANQEMYA 420
  421 IGFCNIIPSF FHCITTSAAL AKTLVKESTG CQTQLSAIVT SLVLLLVLLL IAPLFYSLQK 480
  481 CVLGVITIVN LRGALLKFRD LPKMWRLSRM DTVIWFVTML SSALLSTEIG LLVGVCFSMF 540
  541 CVILRTQMPK ISLLGLEEES EIFESISTYK NLRSKSGIKV FRFIAPLYYI NKECFKSALY 600
  601 KKTLNPVLVK AAWKKAAKRK LKEETVTFHG DPDEVSMQLS HDPLELHTVV IDCSAIQFLD 660
  661 TAGIHTLKEV RRDYEAIGIQ VLLAQCNPSV RDSLAKGEYC KKEEENLLFY SLSEAVAFAE 720
  721 ESQKEKGVCV VNGLSLSGD