YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GBRR3_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.84
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLAFWLAFF TYTWITLMLD ASAVKEPHQQ CLSSPKQTRI RETRMRKDDL TKVWPLKREQ  60
   61 LLHIEDHDFS TRPGFGGSPV PVGIDVQVES IDSISEVNMD FTMTFYLRHY WKDERLSFPS 120
  121 TTNKSMTFDR RLIQKIWVPD IFFVHSKRSF IHDTTVENIM LRVHPDGNVL FSLRITVSAM 180
  181 CFMDFSRFPL DTQNCSLELE SYAYNEEDLM LYWKHGNKSL NTEEHISLSQ FFIEEFSASS 240
  241 GLAFYSSTGW YYRLFINFVL RRHIFFFVLQ TYFPAMLMVM LSWVSFWIDR RAVPARVSLG 300
  301 ITTVLTMSTI VTGVSASMPQ VSYVKAVDVY MWVSSLFVFL SVIEYAAVNY LTTVEEWKQL 360
  361 NRRGKISGMY NIDAVQAMAF DGCYHDGETD VDQTSFFLHS EEDSMRTKFT GSPCADSSQI 420
  421 KRKSLGGNVG RIILENNHVI DTYSRIVFPV VYIIFNLFYW GIYV

Type	Start	End	Confidence
Signal Peptide	1	23	0.83
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	263	0.93
Transmembrane Helix	264	287	0.90
Cytoplasmic	288	296	0.74
Transmembrane Helix	297	318	0.88
Non-Cytoplasmic	319	329	0.75
Transmembrane Helix	330	353	0.86
Cytoplasmic	354	441	0.89
Transmembrane Helix	442	463	0.75
Non-Cytoplasmic	464	464	0.79