YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TSN1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQCFKFIKVM MILFNLLIFL CGAALLAVGI WVSVDGTSFL KAFGSLSSSA MQFVNVGYFL  60
   61 IAAGAVLFIL GFLGCYGAHS ENKCVLMMFF SILLIIFIAE IAGAVVALVY TTMAEQFLTF 120
  121 LVVPAIEKDY GYQTEFTQVW NSTMEGLHCC GFNNYTDFNS SRFVKENKVF PPFCCANNTD 180
  181 SHTVEPCTED KAKSMNVQGC FKQILQKIRT NAVTVGGVAV GVAALELAAM VVSMYLYCNL 240
  241 K

Type	Start	End	Confidence
Cytoplasmic	1	11	0.89
Transmembrane Helix	12	34	0.92
Non-Cytoplasmic	35	55	0.91
Transmembrane Helix	56	77	0.93
Cytoplasmic	78	87	0.78
Transmembrane Helix	88	110	0.93
Non-Cytoplasmic	111	214	0.94
Transmembrane Helix	215	238	0.77
Cytoplasmic	239	241	0.72