YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|213417659, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.66
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKTQTWIIT CIYLQLLLFN PLVKTQEICR NPVTDNVKDI TKLVANLPND YMITLNYVAG  60
   61 MDVLPSHCWL RDMVTHLSVS LTTLLDKFSN ISEGLSNYSI IDKLGKIVDD LVACMEENAP 120
  121 KNVKESLKKP ETRNFTPEEF FSIFNRSIDA FKDFMVASDT SDCVLSSTLG PEKGKAAKSP 180
  181 EDPGLQWTAM ALPALISLVI GFAFGALYWK KKQSSLTRAV ENIQINEEDN EISMLQQKER 240
  241 EFQEV

Type	Start	End	Confidence
Signal Peptide	1	25	0.67
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	186	0.94
Transmembrane Helix	187	209	0.91
Cytoplasmic	210	245	0.92